Package: seroreconstruct 1.1.5

seroreconstruct: Reconstructing Antibody Dynamics to Estimate the Risk of Influenza Virus Infection

A Bayesian framework for inferring influenza infection status from serial antibody measurements. Jointly estimates season-specific infection probabilities, antibody boosting and waning after infection, and baseline hemagglutination inhibition (HAI) titer distributions via Markov chain Monte Carlo (MCMC). Supports multi-season analysis and subgroup comparisons via a group_by interface. See Tsang et al. (2022) <doi:10.1038/s41467-022-29310-8> for methodological details.

Authors:Tim Tsang [aut, cre]

seroreconstruct_1.1.5.tar.gz
seroreconstruct_1.1.5.zip(r-4.7)seroreconstruct_1.1.5.zip(r-4.6)seroreconstruct_1.1.5.zip(r-4.5)
seroreconstruct_1.1.5.tgz(r-4.6-x86_64)seroreconstruct_1.1.5.tgz(r-4.6-arm64)seroreconstruct_1.1.5.tgz(r-4.5-x86_64)seroreconstruct_1.1.5.tgz(r-4.5-arm64)
seroreconstruct_1.1.5.tar.gz(r-4.7-arm64)seroreconstruct_1.1.5.tar.gz(r-4.7-x86_64)seroreconstruct_1.1.5.tar.gz(r-4.6-arm64)seroreconstruct_1.1.5.tar.gz(r-4.6-x86_64)
seroreconstruct_1.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
seroreconstruct/json (API)
NEWS

# Install 'seroreconstruct' in R:
install.packages('seroreconstruct', repos = c('https://timktsang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/timktsang/seroreconstruct/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:
  • flu_activity - Example of flu activity data
  • inputdata - Example of input data
  • para1 - Example of parameter vector for the main model
  • para2 - Example of parameter vector for the baseline HAI titer for the main model

On CRAN:

Conda:

openblascpp

4.48 score 5 scripts 132 downloads 10 exports 3 dependencies

Last updated from:5bb6441eaa. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK166
linux-devel-x86_64OK186
source / vignettesOK219
linux-release-arm64OK158
linux-release-x86_64OK165
macos-release-arm64OK202
macos-release-x86_64OK428
macos-oldrel-arm64OK164
macos-oldrel-x86_64OK398
windows-develOK166
windows-releaseOK145
windows-oldrelOK231
wasm-releaseOK114

Exports:output_model_estimateplot_boostingplot_diagnosticsplot_infection_probplot_trajectoryplot_waningsero_reconstructsimulate_datatable_infectionstable_parameters

Dependencies:RcppRcppArmadilloRcppParallel

Getting Started with seroreconstruct

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-30
Started: 2026-03-23

Statistical Methodology

Rendered frommethodology.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-23
Started: 2026-03-23