R-universe - timktsang (Tim Tsang)

hhdynamics - Fitting Household Transmission Model to Estimate Household Transmission Dynamics of Influenza

A Bayesian household transmission model to estimate household transmission dynamics, with accounting for infection from community and tertiary cases.

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openblascpp

4.48 score 5 scripts 423 downloads

seroreconstruct - Reconstructing Antibody Dynamics to Estimate the Risk of Influenza Virus Infection

A Bayesian framework for inferring influenza infection status from serial antibody measurements. Jointly estimates season-specific infection probabilities, antibody boosting and waning after infection, and baseline hemagglutination inhibition (HAI) titer distributions via Markov chain Monte Carlo (MCMC). Supports multi-season analysis and subgroup comparisons via a group_by interface. See Tsang et al. (2022) <doi:10.1038/s41467-022-29310-8> for methodological details.

Last updated

openblascpp

4.48 score 5 scripts 132 downloads