Package: hhdynamics 1.3.3

hhdynamics: Fitting Household Transmission Model to Estimate Household Transmission Dynamics of Influenza

A Bayesian household transmission model to estimate household transmission dynamics, with accounting for infection from community and tertiary cases.

Authors:Tim Tsang [aut, cre]

hhdynamics_1.3.3.tar.gz
hhdynamics_1.3.3.zip(r-4.7)hhdynamics_1.3.3.zip(r-4.6)hhdynamics_1.3.3.zip(r-4.5)
hhdynamics_1.3.3.tgz(r-4.6-x86_64)hhdynamics_1.3.3.tgz(r-4.6-arm64)hhdynamics_1.3.3.tgz(r-4.5-x86_64)hhdynamics_1.3.3.tgz(r-4.5-arm64)
hhdynamics_1.3.3.tar.gz(r-4.7-arm64)hhdynamics_1.3.3.tar.gz(r-4.7-x86_64)hhdynamics_1.3.3.tar.gz(r-4.6-arm64)hhdynamics_1.3.3.tar.gz(r-4.6-x86_64)
hhdynamics_1.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
hhdynamics/json (API)
NEWS

# Install 'hhdynamics' in R:
install.packages('hhdynamics', repos = c('https://timktsang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/timktsang/hhdynamics/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:
  • inputdata - Example of input data
  • para - Example of parameter vector for the main model
  • SI - Example of serial interval distribution of influenza

On CRAN:

Conda:

openblascpp

4.48 score 5 scripts 423 downloads 12 exports 3 dependencies

Last updated from:4e3a025443. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK143
linux-devel-x86_64OK157
source / vignettesOK213
linux-release-arm64OK188
linux-release-x86_64OK154
macos-release-arm64OK1277
macos-release-x86_64OK268
macos-oldrel-arm64OK138
macos-oldrel-x86_64OK269
windows-develOK132
windows-releaseOK118
windows-oldrelOK138
wasm-releaseOK113

Exports:create_wide_datahousehold_dynamicsplot_attack_rateplot_covariatesplot_diagnosticsplot_householdplot_transmissionrun_MCMCsimulate_datatable_attack_ratestable_covariatestable_parameters

Dependencies:RcppRcppArmadilloRcppParallel

Getting Started with hhdynamics

Rendered fromhhdynamics-intro.Rmdusingknitr::rmarkdownon Jun 07 2026.

Last update: 2026-03-23
Started: 2026-03-19

Statistical Methodology

Rendered fromhhdynamics-methodology.Rmdusingknitr::rmarkdownon Jun 07 2026.

Last update: 2026-03-23
Started: 2026-03-23